An Insightful Approach to Understanding the Mechanism of Amino Acid Adsorption on Inorganic Surfaces: Glycine on Silica

Simple item page
dc.citation.epage261
dc.citation.issue2
dc.citation.spage253
dc.contributor.affiliationUniversity of Colombo
dc.contributor.authorGodahewa, Sahan M.
dc.contributor.authorTillekaratne, Aashani
dc.coverage.placenameЛьвів
dc.coverage.placenameLviv
dc.date.accessioned2024-02-12T08:30:42Z
dc.date.available2024-02-12T08:30:42Z
dc.date.created2023-03-16
dc.date.issued2023-03-16
dc.description.abstractДосліджено адсорбцію гліцину на поверхні аморфного кремнезему з метою показати каталітичну активність поверхонь кремнезему щодо утворення пептидних зв’язків на пребіотичній землі. Наночастинки кремнезему були синтезовані за допомогою мікрохвильового методу й охарактеризовані СЕМ. Гліцин з водного розчину адсорбували на одержаних наночастинках, а адсорбційну поведінку характеризували за допомогою аналізів FTIR і ТГА. За концентрації гліцину 0,5 М і за pH=7 спостерігалася сприятлива адсорбція, підпорядкована моделі ізотерми Ленгмюра. Утворення пептидного зв’язку підтверджено FTIR аналізом. Зроблено висновок, що адсорбція гліцину відбувається через електростатичну взаємодію та утворення водневих зв’язків між поверхнею кремнезему і молекулами гліцину.
dc.description.abstractThe adsorption of glycine on amorphous silica surface has been studied to demonstrate the catalytic activity of silica surfaces towards the formation of peptide bonds on prebiotic earth. Silica nanoparticles were synthesized using a microwave assisted method and the nanoparticles were characterized using SEM. Glycine was adsorbed from aqueous solution on the nanoparticles and the adsorption behavior was characterized using FTIR and TGA analyses. At a glycine concentration of 0.5M and at pH=7, favorable adsorption was observed which obeyed the Langmuir isotherm model. From the FTIR characterization, peptide bond formation was confirmed. It was concluded that the adsorption of glycine occurs via electrostatic interactions as well as hydrogen bonding between the silica surface and glycine molecules.
dc.format.extent253-261
dc.format.pages9
dc.identifier.citationGodahewa S. M. An Insightful Approach to Understanding the Mechanism of Amino Acid Adsorption on Inorganic Surfaces: Glycine on Silica / Sahan M. Godahewa, Aashani Tillekaratne // Chemistry & Chemical Technology. — Lviv : Lviv Politechnic Publishing House, 2023. — Vol 17. — No 2. — P. 253–261.
dc.identifier.citationenGodahewa S. M. An Insightful Approach to Understanding the Mechanism of Amino Acid Adsorption on Inorganic Surfaces: Glycine on Silica / Sahan M. Godahewa, Aashani Tillekaratne // Chemistry & Chemical Technology. — Lviv : Lviv Politechnic Publishing House, 2023. — Vol 17. — No 2. — P. 253–261.
dc.identifier.doidoi.org/10.23939/chcht17.02.253
dc.identifier.issn1996-4196
dc.identifier.urihttps://ena.lpnu.ua/handle/ntb/61253
dc.language.isoen
dc.publisherВидавництво Львівської політехніки
dc.publisherLviv Politechnic Publishing House
dc.relation.ispartofChemistry & Chemical Technology, 2 (17), 2023
dc.relation.references[1] Guo, C.; Holland, G.P. Investigating Lysine Adsorption on Fumed Silica Nanoparticles. J. Phys. Chem. C 2014, 118, 25792-25801.
dc.relation.references[2] Pászti, Z.; Keszthelyi, T.; Hakkel, O.; Guczi, L. Adsorption of Amino Acids on Hydrophilic Surfaces. J. Phys. Condens. Matter 2008, 20, 22. https://doi.org/10.1088/0953-8984/20/22/224014
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dc.relation.references[4] Kitadai, N.; Yokoyama, T.; Nakashima, S. ATR-IR Spectroscopic Study of L-Lysine Adsorption on Amorphous Silica. J. Colloid Interface Sci. 2009, 329, 31-37. http://dx.doi.org/10.1016/j.jcis.2008.09.072
dc.relation.references[5] Song W.; Mano, J.F. Interactions between Cells or Proteins and Surfaces Exhibiting Extreme Wettabilities. Soft Matter 2013, 9, 2985-2999. http://dx.doi.org/10.1039/C3SM27739A
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dc.relation.references[7] Kim, J.-H.; Yoon, J.-Y. Protein Adsorption on Polymer Particles. In Encyclopedia of Surface and Colloid Science; Hubbard, A.T., Ed.; CRC Press, 2002; pp 4373-4381.
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dc.relation.references[13] Bujdák, J.; Rode, B.M. Silica, Alumina and Clay Catalyzed Peptide Bond Formation: Enhanced Efficiency of Alumina Catalyst. Orig. Life Evol. Biosph. 1999, 29, 451-461.
dc.relation.references[14] Lomenech, C.; Bery, G.; Costa, D.; Stievano, L.; Lambert, J.-F. Theoretical and Experimental Study of the Adsorption of Neutral Glycine on Silica from the Gas Phase. ChemPhysChem 2005, 6, 1061-1070. http://dx.doi.org/10.1002/cphc.200400608
dc.relation.references[15] Martra, G.; Deiana, Ch.; Sakhno, Yu.; Barberis, I.; Fabbiani, M.; Pazzi, M.; Vincenti, M. The Formation and Self-Assembly of Long Prebiotic Oligomers Produced by the Condensation of Unactivated Amino Acids on Oxide Surfaces. Angew. Chem. Int. Ed. 2014, 53, 4671-4674. https://doi.org/10.1002/anie.201311089
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dc.relation.references[19] Lambert, J.F.; Jaber, M.; Georgelin, T.; Stievano, L. A Comparative Study of the Catalysis of Peptide Bond Formation by Oxide Surfaces. Phys. Chem. Chem. Phys. 2013, 15, 13371-13380. https://doi.org/10.1039/C3CP51282G
dc.relation.references[20] Rimola, A.; Tosoni, S.; Sodupe, M.; Ugliengo, P. Does Silica Surface Catalyse Peptide Bond Formation? New Insights from First-Principles Calculations. ChemPhysChem 2006, 7, 157-163. https://doi.org/10.1002/cphc.200500401
dc.relation.references[21] Emami, F.S.; Puddu, V.; Berry, R.J.; Varshney, V.; Patwardhan, S.V.; Perry, C.C.; Heinz, H. Prediction of Specific Biomolecule Adsorption on Silica Surfaces as a Function of pH and Particle Size. Chem. Mater. 2014, 26, 5725-5734. https://doi.org/10.1021/cm5026987
dc.relation.references[22] Heinz, H.; Ramezani-Dakhel, H. Simulations of Inorganic-Bioorganic Interfaces to Discover New Materials: Insights, Comparisons to Experiment, Challenges, and Opportunities. Chem. Soc. Rev. 2016, 45, 412-448. https://doi.org/10.1039/C5CS00890E
dc.relation.references[23] Feifel, S.C.; Lisdat, F. Silica Nanoparticles for the Layer-by-Layer Assembly of Fully Electro-Active Cytochrome c Multilayers. J. Nanobiotechnology 2011, 9, 59, 2011. https://doi.org/10.1186/1477-3155-9-59
dc.relation.references[24] Barros, C.H.N.; Fulaz, S.; Vitale, S.; Casey, E.; Quinn, L. Interactions between Functionalised Silica Nanoparticles and Pseudomonas fluorescens Biofilm Matrix: A Focus on the Protein Corona. PLoS One 2020, 15, 1-15. https://doi.org/10.1371/journal.pone.0236441
dc.relation.references[25] Care, A.; Bergquist, P.L.; Sunna, A. Solid-Binding Peptides: Smart Tools for Nanobiotechnology. Trends Biotechnol. 2015, 33, 259-268. https://doi.org/10.1016/j.tibtech.2015.02.005
dc.relation.references[26] Lynch, I.; Dawson, K.A. Protein-nanoparticle interactions. Nano Today 2008, 3, 40-47.
dc.relation.references[27] Slowing, I.; Vivero-Escoto, J.L.; Wu, C.-W.; Lin, V.S.-Y. Mesoporous Silica Nanoparticles as Controlled Release Drug Delivery and Gene Transfection Carriers. Adv. Drug Deliv. Rev. 2008, 60, 1278-1288. https://doi.org/10.1016/j.addr.2008.03.012
dc.relation.references[28] Kamarudin, N.H.N.; Jalil, A.A.; Triwahyono, S.; Timmiati, S.N. Microwave-Assisted Synthesis of Mesoporous Silica Nanoparticles as a Drug Delivery Vehicle. Malaysian J. Anal. Sci. 2016, 20, 1382-1389.
dc.relation.references[29] Singho, N.D.; Johan, M.R. Complex Impedance Spectroscopy Study of Silica Nanoparticles Via Sol-Gel Method. Int. J. Electrochem. Sci. 2012, 7, 5604-5615.
dc.relation.references[30] Beganskiene, V.; Sirutkaitis, M.; Kurtinaitiene, M.; Juskenas, R.; Kareiva, A. FTIR, TEM and NMR Investigations of Stöber Silica Nanoparticles. Mater. Sci. (Medziagotyra) 2004, 10, 287-290.
dc.relation.references[31] Yang, Q.; Gong, X.; Song, T.; Yang, J.; Zhu, S.; Li, Y.; Cui, Y.; Li, Y.; Zhang, B.; Chang, J. Quantum dot-Based Immunochromatography Test Strip for Rapid, Quantitative and Sensitive Detection of Alpha Fetoprotein. Biosens. Bioelectron. 2011, 30, 145-150. https://doi.org/10.1016/j.bios.2011.09.002
dc.relation.references[32] Rimola, A.; Costa, D.; Sodupe, M.; Lambert, J.F.; Ugliengo, P. Silica Surface Features and Their Role in the Adsorption of Biomolecules: Computational Modeling and Experiments. Chem. Rev. 2013, 113, 4216-4313. https://doi.org/10.1021/cr3003054
dc.relation.references[33] Rimola, A.; Sodupe, M.; Ugliengo, P. Amide and Peptide Bond Formation: Interplay between Strained Ring Defects and Silanol Groups at Amorphous Silica Surfaces. J. Phys. Chem. C 2016, 120, 24817-24826. https://doi.org/10.1021/acs.jpcc.6b07945
dc.relation.references[34] Hassanali, A.; Zhang, H.; Knight, C.; Shin, Y.K.; Singer, S.J. The Dissociated Amorphous Silica Surface: Model Development and Evaluation. J. Chem. Theory Comput. 2010, 6, 3456-3471. https://doi.org/10.1021/ct100260z
dc.relation.referencesen[1] Guo, C.; Holland, G.P. Investigating Lysine Adsorption on Fumed Silica Nanoparticles. J. Phys. Chem. P. 2014, 118, 25792-25801.
dc.relation.referencesen[2] Pászti, Z.; Keszthelyi, T.; Hakkel, O.; Guczi, L. Adsorption of Amino Acids on Hydrophilic Surfaces. J. Phys. Condens. Matter 2008, 20, 22. https://doi.org/10.1088/0953-8984/20/22/224014
dc.relation.referencesen[3] Bhakta, S.A.; Evans, E.; Benavidez, T.E.; Garcia, C.D. Protein Adsorption onto Nanomaterials for the Development of Biosensors and Analytical Devices: A Review. Anal. Chim. Acta 2015, 872, 7-25. https://doi.org/10.1016%2Fj.aca.2014.10.031
dc.relation.referencesen[4] Kitadai, N.; Yokoyama, T.; Nakashima, S. ATR-IR Spectroscopic Study of L-Lysine Adsorption on Amorphous Silica. J. Colloid Interface Sci. 2009, 329, 31-37. http://dx.doi.org/10.1016/j.jcis.2008.09.072
dc.relation.referencesen[5] Song W.; Mano, J.F. Interactions between Cells or Proteins and Surfaces Exhibiting Extreme Wettabilities. Soft Matter 2013, 9, 2985-2999. http://dx.doi.org/10.1039/P.3SM27739A
dc.relation.referencesen[6] Zhu, C.; Wang, Q.; Huang, X.; Yun, J.; Hu, Q.; Yang, G. Adsorption of Amino Acids at Clay Surfaces and Implication for Biochemical Reactions: Role and Impact of Surface Charges. Colloids Surf. B 2019, 183, 110458. http://dx.doi.org/10.1016/j.colsurfb.2019.110458
dc.relation.referencesen[7] Kim, J.-H.; Yoon, J.-Y. Protein Adsorption on Polymer Particles. In Encyclopedia of Surface and Colloid Science; Hubbard, A.T., Ed.; CRC Press, 2002; pp 4373-4381.
dc.relation.referencesen[8] Vlasova N.N.; Golovkova, L.P. The Adsorption of Amino Acids on the Surface of Highly Dispersed Silica. Colloid J. 2004, 66, 657-662. http://dx.doi.org/10.1007/s10595-005-0042-3
dc.relation.referencesen[9] Nagendra Prasad, Y.; Ramanathan, S. Role of Amino-Acid Adsorption on Silica and Silicon Nitride Surfaces During STI CMP. Electrochem. Solid-State Lett. 2006, 9, 337-339.
dc.relation.referencesen[10] Nakanishi, K.; Sakiyama, T.; Imamura, K. On the Adsorption of Proteins on Solid Surfaces, a Common but Very Complicated Phenomenon. J. Biosci. Bioeng. 2001, 91, 233-244. https://doi.org/10.1016/S1389-1723(01)80127-4
dc.relation.referencesen[11] Hlady, V.; Buijs, J. Protein Adsorption on Solid Surfaces. Curr. Opin. Biotechnol. 1996, 7, 72-77. https://doi.org/10.1016%2Fs0958-1669(96)80098-x
dc.relation.referencesen[12] Cleaves, H.J. Prebiotic Chemistry: What We Know, What We Don’t. Evol., Educ. Outreach 2012, 5, 342-360. https://doi.org/10.1007/s12052-012-0443-9
dc.relation.referencesen[13] Bujdák, J.; Rode, B.M. Silica, Alumina and Clay Catalyzed Peptide Bond Formation: Enhanced Efficiency of Alumina Catalyst. Orig. Life Evol. Biosph. 1999, 29, 451-461.
dc.relation.referencesen[14] Lomenech, C.; Bery, G.; Costa, D.; Stievano, L.; Lambert, J.-F. Theoretical and Experimental Study of the Adsorption of Neutral Glycine on Silica from the Gas Phase. ChemPhysChem 2005, 6, 1061-1070. http://dx.doi.org/10.1002/cphc.200400608
dc.relation.referencesen[15] Martra, G.; Deiana, Ch.; Sakhno, Yu.; Barberis, I.; Fabbiani, M.; Pazzi, M.; Vincenti, M. The Formation and Self-Assembly of Long Prebiotic Oligomers Produced by the Condensation of Unactivated Amino Acids on Oxide Surfaces. Angew. Chem. Int. Ed. 2014, 53, 4671-4674. https://doi.org/10.1002/anie.201311089
dc.relation.referencesen[16] Stievano, L.; Piao, L.Yu.; Lopes, I.; Meng, M.; Costa, D.; Lambert, J.-F. Glycine and Lysine Adsorption and Reactivity on the Surface of Amorphous Silica. Eur. J. Mineral. 2007, 19, 321-331. https://doi.org/10.1127/0935-1221/2007/0019-1731
dc.relation.referencesen[17] Bujdák, J.; Rode, B.M. Glycine Oligomerization on Silica and Alumina. React. Kinet. Catal. Lett. 1997, 62, 281-286. https://doi.org/10.1007/BF02475464
dc.relation.referencesen[18] Rimola, A.; Fabbiani, M.; Sodupe, M.; Ugliengo, P.; Martra, G. How Does Silica Catalyze the Amide Bond Formation under Dry Conditions? Role of Specific Surface Silanol Pairs. ACS Catal. 2018, 8, 4558-4568. https://doi.org/10.1021/acscatal.7b03961
dc.relation.referencesen[19] Lambert, J.F.; Jaber, M.; Georgelin, T.; Stievano, L. A Comparative Study of the Catalysis of Peptide Bond Formation by Oxide Surfaces. Phys. Chem. Chem. Phys. 2013, 15, 13371-13380. https://doi.org/10.1039/P.3CP51282G
dc.relation.referencesen[20] Rimola, A.; Tosoni, S.; Sodupe, M.; Ugliengo, P. Does Silica Surface Catalyse Peptide Bond Formation? New Insights from First-Principles Calculations. ChemPhysChem 2006, 7, 157-163. https://doi.org/10.1002/cphc.200500401
dc.relation.referencesen[21] Emami, F.S.; Puddu, V.; Berry, R.J.; Varshney, V.; Patwardhan, S.V.; Perry, C.C.; Heinz, H. Prediction of Specific Biomolecule Adsorption on Silica Surfaces as a Function of pH and Particle Size. Chem. Mater. 2014, 26, 5725-5734. https://doi.org/10.1021/cm5026987
dc.relation.referencesen[22] Heinz, H.; Ramezani-Dakhel, H. Simulations of Inorganic-Bioorganic Interfaces to Discover New Materials: Insights, Comparisons to Experiment, Challenges, and Opportunities. Chem. Soc. Rev. 2016, 45, 412-448. https://doi.org/10.1039/P.5CS00890E
dc.relation.referencesen[23] Feifel, S.C.; Lisdat, F. Silica Nanoparticles for the Layer-by-Layer Assembly of Fully Electro-Active Cytochrome c Multilayers. J. Nanobiotechnology 2011, 9, 59, 2011. https://doi.org/10.1186/1477-3155-9-59
dc.relation.referencesen[24] Barros, C.H.N.; Fulaz, S.; Vitale, S.; Casey, E.; Quinn, L. Interactions between Functionalised Silica Nanoparticles and Pseudomonas fluorescens Biofilm Matrix: A Focus on the Protein Corona. PLoS One 2020, 15, 1-15. https://doi.org/10.1371/journal.pone.0236441
dc.relation.referencesen[25] Care, A.; Bergquist, P.L.; Sunna, A. Solid-Binding Peptides: Smart Tools for Nanobiotechnology. Trends Biotechnol. 2015, 33, 259-268. https://doi.org/10.1016/j.tibtech.2015.02.005
dc.relation.referencesen[26] Lynch, I.; Dawson, K.A. Protein-nanoparticle interactions. Nano Today 2008, 3, 40-47.
dc.relation.referencesen[27] Slowing, I.; Vivero-Escoto, J.L.; Wu, C.-W.; Lin, V.S.-Y. Mesoporous Silica Nanoparticles as Controlled Release Drug Delivery and Gene Transfection Carriers. Adv. Drug Deliv. Rev. 2008, 60, 1278-1288. https://doi.org/10.1016/j.addr.2008.03.012
dc.relation.referencesen[28] Kamarudin, N.H.N.; Jalil, A.A.; Triwahyono, S.; Timmiati, S.N. Microwave-Assisted Synthesis of Mesoporous Silica Nanoparticles as a Drug Delivery Vehicle. Malaysian J. Anal. Sci. 2016, 20, 1382-1389.
dc.relation.referencesen[29] Singho, N.D.; Johan, M.R. Complex Impedance Spectroscopy Study of Silica Nanoparticles Via Sol-Gel Method. Int. J. Electrochem. Sci. 2012, 7, 5604-5615.
dc.relation.referencesen[30] Beganskiene, V.; Sirutkaitis, M.; Kurtinaitiene, M.; Juskenas, R.; Kareiva, A. FTIR, TEM and NMR Investigations of Stöber Silica Nanoparticles. Mater. Sci. (Medziagotyra) 2004, 10, 287-290.
dc.relation.referencesen[31] Yang, Q.; Gong, X.; Song, T.; Yang, J.; Zhu, S.; Li, Y.; Cui, Y.; Li, Y.; Zhang, B.; Chang, J. Quantum dot-Based Immunochromatography Test Strip for Rapid, Quantitative and Sensitive Detection of Alpha Fetoprotein. Biosens. Bioelectron. 2011, 30, 145-150. https://doi.org/10.1016/j.bios.2011.09.002
dc.relation.referencesen[32] Rimola, A.; Costa, D.; Sodupe, M.; Lambert, J.F.; Ugliengo, P. Silica Surface Features and Their Role in the Adsorption of Biomolecules: Computational Modeling and Experiments. Chem. Rev. 2013, 113, 4216-4313. https://doi.org/10.1021/cr3003054
dc.relation.referencesen[33] Rimola, A.; Sodupe, M.; Ugliengo, P. Amide and Peptide Bond Formation: Interplay between Strained Ring Defects and Silanol Groups at Amorphous Silica Surfaces. J. Phys. Chem. P. 2016, 120, 24817-24826. https://doi.org/10.1021/acs.jpcc.6b07945
dc.relation.referencesen[34] Hassanali, A.; Zhang, H.; Knight, C.; Shin, Y.K.; Singer, S.J. The Dissociated Amorphous Silica Surface: Model Development and Evaluation. J. Chem. Theory Comput. 2010, 6, 3456-3471. https://doi.org/10.1021/ct100260z
dc.relation.urihttps://doi.org/10.1088/0953-8984/20/22/224014
dc.relation.urihttps://doi.org/10.1016%2Fj.aca.2014.10.031
dc.relation.urihttp://dx.doi.org/10.1016/j.jcis.2008.09.072
dc.relation.urihttp://dx.doi.org/10.1039/C3SM27739A
dc.relation.urihttp://dx.doi.org/10.1016/j.colsurfb.2019.110458
dc.relation.urihttp://dx.doi.org/10.1007/s10595-005-0042-3
dc.relation.urihttps://doi.org/10.1016/S1389-1723(01)80127-4
dc.relation.urihttps://doi.org/10.1016%2Fs0958-1669(96)80098-x
dc.relation.urihttps://doi.org/10.1007/s12052-012-0443-9
dc.relation.urihttp://dx.doi.org/10.1002/cphc.200400608
dc.relation.urihttps://doi.org/10.1002/anie.201311089
dc.relation.urihttps://doi.org/10.1127/0935-1221/2007/0019-1731
dc.relation.urihttps://doi.org/10.1007/BF02475464
dc.relation.urihttps://doi.org/10.1021/acscatal.7b03961
dc.relation.urihttps://doi.org/10.1039/C3CP51282G
dc.relation.urihttps://doi.org/10.1002/cphc.200500401
dc.relation.urihttps://doi.org/10.1021/cm5026987
dc.relation.urihttps://doi.org/10.1039/C5CS00890E
dc.relation.urihttps://doi.org/10.1186/1477-3155-9-59
dc.relation.urihttps://doi.org/10.1371/journal.pone.0236441
dc.relation.urihttps://doi.org/10.1016/j.tibtech.2015.02.005
dc.relation.urihttps://doi.org/10.1016/j.addr.2008.03.012
dc.relation.urihttps://doi.org/10.1016/j.bios.2011.09.002
dc.relation.urihttps://doi.org/10.1021/cr3003054
dc.relation.urihttps://doi.org/10.1021/acs.jpcc.6b07945
dc.relation.urihttps://doi.org/10.1021/ct100260z
dc.rights.holder© Національний університет “Львівська політехніка”, 2023
dc.rights.holder© Godahewa S. M., Tillekaratne A., 2023
dc.subjectпребіотичний
dc.subjectкремнезем
dc.subjectамінокислота
dc.subjectгліцин
dc.subjectадсорбція
dc.subjectпептид
dc.subjectprebiotic
dc.subjectsilica
dc.subjectamino acid
dc.subjectglycine
dc.subjectadsorption
dc.subjectpeptide
dc.titleAn Insightful Approach to Understanding the Mechanism of Amino Acid Adsorption on Inorganic Surfaces: Glycine on Silica
dc.title.alternativeКомплексний підхід до розуміння механізму адсорбції амінокислот на неорганічних поверхнях: гліцин на кремнеземі
dc.typeArticle

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Chemistry & Chemical Technology. – 2023. – Vol. 17, No. 2